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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs3771570 1 rs62193204 chr2:242315443 ANO7 chr2:242127924-242164791:+ 0.33 3.85 0.000134 Prostate cancer
THCA cis rs3771570 1 rs62193204 chr2:242315443 SEPT2 chr2:242254723-242293439:+ -0.3 -4.5 8.43E-6 Prostate cancer
THCA cis rs3771570 1 rs62193205 chr2:242316512 ANO7 chr2:242127924-242164791:+ 0.33 3.88 0.000117 Prostate cancer
THCA cis rs3771570 1 rs62193205 chr2:242316512 SEPT2 chr2:242254723-242293439:+ -0.3 -4.51 8.18E-6 Prostate cancer
THCA cis rs3771570 1 rs62193207 chr2:242318501 ANO7 chr2:242127924-242164791:+ 0.33 3.85 0.000134 Prostate cancer
THCA cis rs3771570 1 rs62193207 chr2:242318501 SEPT2 chr2:242254723-242293439:+ -0.3 -4.5 8.43E-6 Prostate cancer
THCA cis rs3771570 1 rs62193208 chr2:242322430 ANO7 chr2:242127924-242164791:+ 0.33 3.82 0.000149 Prostate cancer
THCA cis rs3771570 1 rs62193208 chr2:242322430 SEPT2 chr2:242254723-242293439:+ -0.3 -4.44 1.14E-5 Prostate cancer
THCA cis rs3771570 1 rs62193209 chr2:242323523 ANO7 chr2:242127924-242164791:+ 0.37 3.88 0.000117 Prostate cancer
THCA cis rs3771570 1 rs62193209 chr2:242323523 SEPT2 chr2:242254723-242293439:+ -0.29 -3.82 0.000149 Prostate cancer
THCA cis rs3771570 1 rs62193210 chr2:242323616 ANO7 chr2:242127924-242164791:+ 0.33 3.82 0.000149 Prostate cancer
THCA cis rs3771570 1 rs62193210 chr2:242323616 SEPT2 chr2:242254723-242293439:+ -0.3 -4.44 1.14E-5 Prostate cancer
THCA cis rs3771570 1 rs62193221 chr2:242354632 ANO7 chr2:242127924-242164791:+ 0.33 3.88 0.00012 Prostate cancer
THCA cis rs3771570 1 rs62193221 chr2:242354632 SEPT2 chr2:242254723-242293439:+ -0.3 -4.55 6.92E-6 Prostate cancer
THCA cis rs3771570 1 rs62193256 chr2:242362168 ANO7 chr2:242127924-242164791:+ 0.32 3.8 0.000164 Prostate cancer